X-FireWire Firmware for Mac: Rosetta 200 Rev E Includes X-FireWire Firmware, X-FireWire Updater, X-FireWire User’s Guide, Maestro Software and Read Me Download. This can be accomplished by holding down 2 and 3 during boot on computers running Mac OS X 10.6 or Mac OS X 10.7. The 32-bit kernel is not available with Mac OS X 10.8. Rosetta is no longer supported in Mac OS X 10.7 or later. Because previous versions of NI-488.2 use Rosetta, some components will not work even if booted into 32-bit kernel mode. Unofficially, EveryMac.com is disappointed to report that there is not a viable 'hack' option to run 'Rosetta' within Mac OS X Lion, per se, but there are somewhat viable workaround methods to continue to run Mac OS X 10.6 Snow Leopard, which supports Rosetta, as well as Lion. Minecraft 1.8.1 Build anything you can imagine. Outlook Express 5.0.6 Microsoft Outlook Express is an email client; Virtual DJ 8.0.2348 VirtualDJ is the hottest MP3 mixing software. Mozilla Firefox 82.0.2 Firefox is a fast, full-featured Web browser. Windows XP Service Pack 3 SP 3 Windows XP Service Pack 3 Build 5512 FINAL.
First download Rosetta 3.1, all the bundle stuff. –uncompress the bundle file, and keep uncompressing all “.tgz” files Then download corrections for rosetta_source at here: http://zinc.ucsf.edu/~colin/snow_leopard_tools.tar.gz (see this discussion topic at Rosetta forum : node 1705) –go to rosetta_source, uncompress the snow_leopard_tool.tar.gz and the uncompressed files will automatically overwrite the files.
— use “scons” to compile and install by command: “scons bin mode=release”
The compilation takes approximately 1 hour.
NOTE: For Mac users, you can install scons by using Fink.
Second, you need g77 to compile the rosetta_fragments, but even using the unstable packages provided in fink, the x86_64 version of g77 for OS 10.6 is not available. I went to “high performance computing for mac os X” to download g77-3.4 which is a binary file already. No need to compile it by yourself. (I tried gfortran, a lot of errors occurred, but g77 does good job).
After getting g77 works, go to resetta_fragments/nnmake and type make to have pNNMAKE.gnu compiled. This is required for CS-Rosetta,too.
Part B–CS-Rosetta
First, download the all required compressed file at CS-Rosetta official site. –chmod 711 install.com if this is not executable. — run ./install.com and the script will ask you to provide the full path of your rosetta-3.1 (not the path of rosetta_source).
You should see error messages that the install script cannot find some Rosetta executable files and my solution is to make soft links at “rosetta_source/bin”
— After installation, you should see something like “no errors found” and put the environmental setup in your csh or tcsh and source/update the shell.
To test the CS-Rosetta, I directly go to examples/input, type: runCSRjob3.com gb3.tab and I got:
usersxxx:input>runCSRjob3.com gb3 gb3.pdb gb3.tab lusersxxx:input>runCSRjob3.com gb3.tab pre-checking input chemcial shift data … *** Shift outlier: 14 G C Secondary Shift: -3.765 Limit: -3.725 *** Shift outlier: 15 E HA Secondary Shift: 1.313 Limit: 1.047 *** Shift outlier: 17 T HA Secondary Shift: 1.498 Limit: 1.047 *** Shift outlier: 19 K HA Secondary Shift: 1.070 Limit: 1.047 *** Shift outlier: 25 T CA Secondary Shift: 4.791 Limit: 4.660 *** Shift outlier: 27 E HA Secondary Shift: -1.698 Limit: -1.080 *** Shift outlier: 29 A C Secondary Shift: 4.021 Limit: 3.727 *** Shift outlier: 35 N C Secondary Shift: 4.104 Limit: 3.727 *** Shift outlier: 51 T HA Secondary Shift: 1.197 Limit: 1.047 *** Shift outlier: 52 F HA Secondary Shift: 1.164 Limit: 1.047 *** Shift outlier: 54 V CA Secondary Shift: -4.355 Limit: -3.445 *** Shift outlier: 56 E N Secondary Shift: 10.828 Limit: 10.047 *** C shift referecing offset: -1.289 ppm Checking and preparing files … MFR fragments searching … (may take a few hours…) Done! MFR fragment tables farg9.t000.mfr.tab and frag3.t000.mfr.tab generated.
Converting to ROSETTA fragments … 9mer fragments … Checking MFR Fragments Candidates … 200 fragments candidates for target fragment 1-9 200 fragments candidates for target fragment 2-10 200 fragments candidates for target fragment 3-11 200 fragments candidates for target fragment 4-12 200 fragments candidates for target fragment 5-13 200 fragments candidates for target fragment 6-14 200 fragments candidates for target fragment 7-15 200 fragments candidates for target fragment 8-16 200 fragments candidates for target fragment 9-17 200 fragments candidates for target fragment 10-18 200 fragments candidates for target fragment 11-19 200 fragments candidates for target fragment 12-20 200 fragments candidates for target fragment 13-21 200 fragments candidates for target fragment 14-22 200 fragments candidates for target fragment 15-23 200 fragments candidates for target fragment 16-24 200 fragments candidates for target fragment 17-25 200 fragments candidates for target fragment 18-26 200 fragments candidates for target fragment 19-27 200 fragments candidates for target fragment 20-28 200 fragments candidates for target fragment 21-29 200 fragments candidates for target fragment 22-30 200 fragments candidates for target fragment 23-31 200 fragments candidates for target fragment 24-32 200 fragments candidates for target fragment 25-33 200 fragments candidates for target fragment 26-34 200 fragments candidates for target fragment 27-35 200 fragments candidates for target fragment 28-36 200 fragments candidates for target fragment 29-37 200 fragments candidates for target fragment 30-38 200 fragments candidates for target fragment 31-39 200 fragments candidates for target fragment 32-40 200 fragments candidates for target fragment 33-41 200 fragments candidates for target fragment 34-42 200 fragments candidates for target fragment 35-43 200 fragments candidates for target fragment 36-44 200 fragments candidates for target fragment 37-45 200 fragments candidates for target fragment 38-46 200 fragments candidates for target fragment 39-47 200 fragments candidates for target fragment 40-48 200 fragments candidates for target fragment 41-49 200 fragments candidates for target fragment 42-50 200 fragments candidates for target fragment 43-51 200 fragments candidates for target fragment 44-52 200 fragments candidates for target fragment 45-53 200 fragments candidates for target fragment 46-54 200 fragments candidates for target fragment 47-55 200 fragments candidates for target fragment 48-56 Collecting structural information … Done (2908)! Creating Rosetta fragments … Done! 3mer fragments … Checking MFR Fragments Candidates … 200 fragments candidates for target fragment 1-3 200 fragments candidates for target fragment 2-4 200 fragments candidates for target fragment 3-5 200 fragments candidates for target fragment 4-6 200 fragments candidates for target fragment 5-7 200 fragments candidates for target fragment 6-8 200 fragments candidates for target fragment 7-9 200 fragments candidates for target fragment 8-10 200 fragments candidates for target fragment 9-11 200 fragments candidates for target fragment 10-12 200 fragments candidates for target fragment 11-13 200 fragments candidates for target fragment 12-14 200 fragments candidates for target fragment 13-15 200 fragments candidates for target fragment 14-16 200 fragments candidates for target fragment 15-17 200 fragments candidates for target fragment 16-18 200 fragments candidates for target fragment 17-19 200 fragments candidates for target fragment 18-20 200 fragments candidates for target fragment 19-21 200 fragments candidates for target fragment 20-22 200 fragments candidates for target fragment 21-23 200 fragments candidates for target fragment 22-24 200 fragments candidates for target fragment 23-25 200 fragments candidates for target fragment 24-26 200 fragments candidates for target fragment 25-27 200 fragments candidates for target fragment 26-28 200 fragments candidates for target fragment 27-29 200 fragments candidates for target fragment 28-30 200 fragments candidates for target fragment 29-31 200 fragments candidates for target fragment 30-32 200 fragments candidates for target fragment 31-33 200 fragments candidates for target fragment 32-34 200 fragments candidates for target fragment 33-35 200 fragments candidates for target fragment 34-36 200 fragments candidates for target fragment 35-37 200 fragments candidates for target fragment 36-38 200 fragments candidates for target fragment 37-39 200 fragments candidates for target fragment 38-40 200 fragments candidates for target fragment 39-41 200 fragments candidates for target fragment 40-42 200 fragments candidates for target fragment 41-43 200 fragments candidates for target fragment 42-44 200 fragments candidates for target fragment 43-45 200 fragments candidates for target fragment 44-46 200 fragments candidates for target fragment 45-47 200 fragments candidates for target fragment 46-48 200 fragments candidates for target fragment 47-49 200 fragments candidates for target fragment 48-50 200 fragments candidates for target fragment 49-51 200 fragments candidates for target fragment 50-52 200 fragments candidates for target fragment 51-53 200 fragments candidates for target fragment 52-54 200 fragments candidates for target fragment 53-55 200 fragments candidates for target fragment 54-56 Collecting structural information … Done (4027)! Creating Rosetta fragments … Done!
Fragment Candidates Ready! Go to rosetta, and type runRosetta3.com to run ROSETTA(3.X)!
However, when I go to the just generated rosetta folder and run “runRosetta3.com”, I got errors:
usersxxx:rosetta>runRosetta3.com ERROR: Option matching -in::file::frag3 not found in command line top-level context
—> I checked the Rosetta 3 command list and edit the “runRosetta3.com”, replace all double colons “::” by single colons “:” and save it. The edited “runRosetta3.com” is running now.
–> After testing, taking off one colon is necessary to run CS-rosetta well on my iMac.